PlumeQuarto class

Class that pushes author metadata in YAML files or the YAML header of Quarto files.

Super classes

plume::NameHandler -> plume::PlumeHandler -> plume::StatusSetter -> plume::StatusSetterPlumeQuarto -> PlumeQuarto

Methods

Public methods

• PlumeQuarto$new()

• PlumeQuarto$to_yaml()

• PlumeQuarto$clone()

Inherited methods

• plume::PlumeHandler$get_plume()
• plume::PlumeHandler$get_roles()
• plume::PlumeHandler$print()
• plume::StatusSetter$set_corresponding_authors()
• plume::StatusSetterPlumeQuarto$set_cofirst_authors()
• plume::StatusSetterPlumeQuarto$set_deceased()
• plume::StatusSetterPlumeQuarto$set_equal_contributor()

---

Method new()

Create a PlumeQuarto object.

Usage

PlumeQuarto$new(
  data,
  file,
  names = NULL,
  roles = credit_roles(),
  credit_roles = FALSE,
  initials_given_name = FALSE,
  by = NULL
)

Arguments

data

A data frame containing author-related data.

file

A .qmd, .yml or .yaml file to insert author data into.

names

A vector of key-value pairs specifying custom names to use, where keys are default names and values their respective replacements.

roles

A vector of key-value pairs defining roles where keys identify columns and values describe the actual roles to use.

credit_roles

It is now recommended to use roles = credit_roles() to use the Contributor Roles Taxonomy.

initials_given_name

Should the initials of given names be used?

by

A character string defining the default variable used to assign specific metadata to authors in all set_*() methods. By default, uses authors' id.

Returns

A PlumeQuarto object.

---

Method to_yaml()

Push or update author information in a YAML file or YAML header. The generated YAML complies with Quarto's author and affiliations schemas.

Usage

PlumeQuarto$to_yaml()

Details

If missing, to_yaml() inserts author information into the desired file. Otherwise, the function replaces old author and affiliations values with the ones provided in the input data.

Returns

The input file invisibly.

---

Method clone()

The objects of this class are cloneable with this method.

Usage

PlumeQuarto$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

Examples

# Create a simple temporary file with a YAML header
# containing a title
tmp_file <- tempfile(fileext = ".qmd")
readr::write_lines("---\ntitle: Encyclopédie\n---", tmp_file)

# View the temporary file
cat(readr::read_file(tmp_file))
#> ---
#> title: Encyclopédie
#> ---

# Create a PlumeQuarto instance using the temporary file
# you've just created
aut <- PlumeQuarto$new(
  encyclopedists,
  file = tmp_file
)

# And push author data to the YAML header
aut$to_yaml()

cat(readr::read_file(tmp_file))
#> ---
#> title: Encyclopédie
#> author:
#>   - id: aut1
#>     name:
#>       given: Denis
#>       family: Diderot
#>     email: diderot@encyclopediste.fr
#>     phone: '+1234'
#>     orcid: 0000-0000-0000-0001
#>     note: born in 1713 in Langres
#>     roles:
#>       - Supervision
#>       - Writing - original draft
#>     affiliations:
#>       - ref: aff1
#>   - id: aut2
#>     name:
#>       given: Jean-Jacques
#>       family: Rousseau
#>     email: rousseau@encyclopediste.fr
#>     orcid: 0000-0000-0000-0002
#>     roles:
#>       - Writing - original draft
#>     affiliations:
#>       - ref: aff2
#>   - id: aut3
#>     name:
#>       given: François-Marie
#>       family: Arouet
#>     email: arouet@encyclopediste.fr
#>     note: also known as Voltaire
#>     roles:
#>       - Writing - original draft
#>     affiliations:
#>       - ref: aff2
#>   - id: aut4
#>     name:
#>       given: Jean
#>       family: Le Rond d'Alembert
#>     email: alembert@encyclopediste.fr
#>     orcid: 0000-0000-0000-0003
#>     note: born in 1717 in Paris
#>     roles:
#>       - Supervision
#>       - Writing - original draft
#>     affiliations:
#>       - ref: aff1
#>       - ref: aff3
#> affiliations:
#>   - id: aff1
#>     name: Université de Paris
#>   - id: aff2
#>     name: Lycée Louis-le-Grand
#>   - id: aff3
#>     name: Collège des Quatre-Nations
#> ---

# Pushing again with new data updates the YAML
# header accordingly
aut <- PlumeQuarto$new(
  dplyr::slice(encyclopedists, 2),
  file = tmp_file
)
aut$to_yaml()

cat(readr::read_file(tmp_file))
#> ---
#> title: Encyclopédie
#> author:
#>   - name:
#>       given: Jean-Jacques
#>       family: Rousseau
#>     email: rousseau@encyclopediste.fr
#>     orcid: 0000-0000-0000-0002
#>     roles:
#>       - Writing - original draft
#>     affiliations:
#>       - ref: aff1
#> affiliations:
#>   - id: aff1
#>     name: Lycée Louis-le-Grand
#> ---

# Clean up the temporary file
unlink(tmp_file)